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I've had this happen when I had too many USB devices plugged into it. It was having power underrun, and acting unresponsive while trying to compensate. I solved it with a powered USB hub.
Edit: I've had pairing it with an off brand power brick cause the same problem, too. Apparently the 3 and later Pi really want better power quality regulation, and some of the cheapo bricks I had lying around - while providing the right Volts and Amps, didn't control the variation well enough for the modern Pi computer.
That's the weird part is that I don't have any USB devices attached. I have Ethernet, power cable, and the fan on the case has pins going to some headers.
The case did come with another power supply so maybe I'll try that and see if anything changes.