I think your last question is what I would focus on. There's not much you can do with malformed anything unless you're expecting, so I don't know what else you would do aside from throw an exception and move on.
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Just not handling the filedescriptors isn't really an option though. They should at least be closed to ensure the process doesn't run out of filedescriptors which would be a pretty easy way of DOS'ing that service
Yes, I'm agreeing. You should be closing any open resources as part of your usual logic.