Selfhosted
A place to share alternatives to popular online services that can be self-hosted without giving up privacy or locking you into a service you don't control.
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This may help: Container compatibility. MKV files will be remuxed when played via WebUI. Try playing an MP4 file and see if it's the same.
Well this info kills any desire I have to install Jellyfin. =(
That has nothing to do with Jellyfin itself. Any comparable service will have the exact same issue because the root cause are browsers not supporting the container.